Nanopore Sequencing Publications
196. 
H. Hu*, S. Banerjee*, D. Estrada, R. Bashir, W. P. King, "Tip-Based Nanofabrication of Arbitrary Shapes of Graphene Nanostructures for Device Applications", RSC Advances, 2015. DOI: 10.1039/C5RA04257G
191. J. Shim, Y. Kim, G. Humphrey, S. Myong, A. Nardulli, F. Kosari, G. Vasmatzis, W. Taylor, D. Ahlquist, and R. Bashir, "Solid State Nanopores for Detection of Methylation in Double-Strand DNA Fragments", ACS Nano, 2015. Vol. 9, No. 1, pp. 290-300.
186. S. Banerjee, J. Wilson, E. Corbin, J. Shim, A. Aksimentiev, R. Bashir, "Slowing DNA Transport Using Graphene-DNA interactions", Advanced Functional Materials, 2014. 22 DEC 2014, DOI: 10.1002/adfm.201403719
164.
J. Shim, J. A. Rivera, and R. Bashir, "Electron beam induced local crystalization of HfO2 nanopores for biosensing applications", Nanoscale, 2013, 5 (22), 10887-10893. Cover Article.
158.R. Bashir, "Direct DNA Sequencing Using Nanopore Sensors", Genetic Engineering News '60 Years of DNA' Issue. Vol. 33, no. 7. pp34-35. 2013.
154.J. Shim, G. Humphreys, B.M. Venkatesan, J.M. Munz, X. Zou, C. Sathe, K. Schulten, F. Kosari, A. Nardulli, G. Vasmatzis, and R. Bashir, "Detection and Quantification of Methylation in DNA using Solid-State Nanopores," Scientific Reports, 3, 1389, 2013.
149.S. Banerjee, J. Shim, J. Rivera, X. Jin, D. Estrada, V. Solovyeva, X. You, J. Pak, E. Pop, N. Aluru, R. Bashir, "Electrochemistry at Edge of Single Graphene Layer in a Nanopore", ACS Nano, 7 (1), pp 834-843, 2013.
132.B. M. Venkatesan, D. Estrada, S. Banerjee, X. Jin, V. E. Dorgan, M. Bae, N. Aluru, E. Pop, and R. Bashir, "Stacked Graphene-Al2O3 Nanopore Sensors for Sensitive Detection of DNA and DNA-Protein Complexes". ACS Nano, Vol. 6, No. 1, 441-450, 2012.
127. B. M. Venkatesan and R. Bashir, "Nanopore Sensors for Nucleic Acid Analysis". Nature Nanotechnology, 2011, 10.1038/nnano.2011.129.
122.B. M. Venkatesan, J. Polans, J. Comer, S. Sridhar, D. Wendell, A. Aksimentiev, and R. Bashir, "Lipid Bilayer Coated Al2O3 Nanopore Sensors: Towards A Hybrid Biological Solid-State Nanopore", Biomedical Microdevices, DOI: 10.1007/s10544-011-9537-43, 2011.
106.
B. M. Venkatesan, A.B. Shah, J.M. Zuo, and R. Bashir, "DNA Sensing using Nano-crystalline Surface Enhanced Al2O3 Nanopore Sensors", Advanced Functional Materials, 20, 8, 1266-1275, 2010.Cover Article.
97.
B. M. Venkatesan, B. Dorvel, S. Yemenicioglu, N. Watkins, I. Petrov, R. Bashir, "Fabrication and characterization of low stress, mechanically robust Al2O3 nanopores for the electronic detection of biomolecules", Advanced Materials, 21(27), 2009, 2771 – 2776.Cover Article.
96.J. M. Moon, D. Akin, Y. Xuan, P. Ye, P. Guo, R. Bashir, "Capture and alignment of phi29 viral particles in sub-40 nanometer porous alumina membranes", Biomedical Microdevices, 11:1 February 2009.
70.S. Iqbal, D. Akin, R. Bashir, "Solid State Nanopores with DNA Selectivity", Nature Nanotechnology, 2, 243 - 248, 01 Apr 2007.
67.H. Chang, M. Venkatesan, S. M. Iqbal, D. Peroulis, G. Andreadakis, F. Kosari, G. Vasmatzis, R. Bashir, "DNA Counterion Current and Saturation Examined by a Solid State Nanopore Sensor", Biomedical Microdevices, Volume 8, Number 3, September, 2006, Pages 263-269.
60. H. Chang, S. M. Iqbal., E. A. Stach, A. H. King, N. J. Zaluzec, R. Bashir, "Fabrication and Characterization of Solid State Nanopores using Field Emission Scanning Electron Beam", Applied Physics Letters, 88, 103109, 2006. Also published online in Virtual Journal of Nanoscale Science & Technology, March 20, 2006.
55. S. Iqbal, G. Balasubramaium, S. Ghosh, D. Bergstrom, R. Bashir, "Electrical Characterization of DNA Molecules in Nano-scale Gap Junctions", Applied Physics Letters, 86, 11th April, 2005. Also selected for the April 15, 2005 issue of Virtual Journal of Biological Physics Research.
50.H. Chang, F. Kosari, G. Andreakakis, M. A. Alam, G. Vasmatzis, R. Bashir, "DNA Mediated Fluctuations in Ionic Current through Silicon Oxide Nano-Channels", Nano Letters vol. 4, No. 8, 1551-1556, 2004.
36.H. Chang, A. Ikram, T. Geng, F. Kosari, G. Vasmatzis, A. Bhunia, and R. Bashir, "Electrical characterization of microorganisms using microfabricated devices", J. Vac. Sci. Technol. B 20, 2058 (2002).
H. Hu*, S. Banerjee*, D. Estrada, R. Bashir, W. P. King, "Tip-Based Nanofabrication of Arbitrary Shapes of Graphene Nanostructures for Device Applications", RSC Advances, 2015. DOI: 10.1039/C5RA04257G191.
J. Shim, Y. Kim, G. Humphrey, S. Myong, A. Nardulli, F. Kosari, G. Vasmatzis, W. Taylor, D. Ahlquist, and R. Bashir, "Solid State Nanopores for Detection of Methylation in Double-Strand DNA Fragments", ACS Nano, 2015. Vol. 9, No. 1, pp. 290-300.186.
S. Banerjee, J. Wilson, E. Corbin, J. Shim, A. Aksimentiev, R. Bashir, "Slowing DNA Transport Using Graphene-DNA interactions", Advanced Functional Materials, 2014. 22 DEC 2014, DOI: 10.1002/adfm.201403719164.
J. Shim, J. A. Rivera, and R. Bashir, "Electron beam induced local crystalization of HfO2 nanopores for biosensing applications", Nanoscale, 2013, 5 (22), 10887-10893. Cover Article.158.
R. Bashir, "Direct DNA Sequencing Using Nanopore Sensors", Genetic Engineering News '60 Years of DNA' Issue. Vol. 33, no. 7. pp34-35. 2013.154.
J. Shim, G. Humphreys, B.M. Venkatesan, J.M. Munz, X. Zou, C. Sathe, K. Schulten, F. Kosari, A. Nardulli, G. Vasmatzis, and R. Bashir, "Detection and Quantification of Methylation in DNA using Solid-State Nanopores," Scientific Reports, 3, 1389, 2013.149.
S. Banerjee, J. Shim, J. Rivera, X. Jin, D. Estrada, V. Solovyeva, X. You, J. Pak, E. Pop, N. Aluru, R. Bashir, "Electrochemistry at Edge of Single Graphene Layer in a Nanopore", ACS Nano, 7 (1), pp 834-843, 2013.132.
B. M. Venkatesan, D. Estrada, S. Banerjee, X. Jin, V. E. Dorgan, M. Bae, N. Aluru, E. Pop, and R. Bashir, "Stacked Graphene-Al2O3 Nanopore Sensors for Sensitive Detection of DNA and DNA-Protein Complexes". ACS Nano, Vol. 6, No. 1, 441-450, 2012.127.
B. M. Venkatesan and R. Bashir, "Nanopore Sensors for Nucleic Acid Analysis". Nature Nanotechnology, 2011, 10.1038/nnano.2011.129.122.
B. M. Venkatesan, J. Polans, J. Comer, S. Sridhar, D. Wendell, A. Aksimentiev, and R. Bashir, "Lipid Bilayer Coated Al2O3 Nanopore Sensors: Towards A Hybrid Biological Solid-State Nanopore", Biomedical Microdevices, DOI: 10.1007/s10544-011-9537-43, 2011. 106.
B. M. Venkatesan, A.B. Shah, J.M. Zuo, and R. Bashir, "DNA Sensing using Nano-crystalline Surface Enhanced Al2O3 Nanopore Sensors", Advanced Functional Materials, 20, 8, 1266-1275, 2010.Cover Article.97.
B. M. Venkatesan, B. Dorvel, S. Yemenicioglu, N. Watkins, I. Petrov, R. Bashir, "Fabrication and characterization of low stress, mechanically robust Al2O3 nanopores for the electronic detection of biomolecules", Advanced Materials, 21(27), 2009, 2771 – 2776.Cover Article.96.
J. M. Moon, D. Akin, Y. Xuan, P. Ye, P. Guo, R. Bashir, "Capture and alignment of phi29 viral particles in sub-40 nanometer porous alumina membranes", Biomedical Microdevices, 11:1 February 2009.70.
S. Iqbal, D. Akin, R. Bashir, "Solid State Nanopores with DNA Selectivity", Nature Nanotechnology, 2, 243 - 248, 01 Apr 2007.67.
H. Chang, M. Venkatesan, S. M. Iqbal, D. Peroulis, G. Andreadakis, F. Kosari, G. Vasmatzis, R. Bashir, "DNA Counterion Current and Saturation Examined by a Solid State Nanopore Sensor", Biomedical Microdevices, Volume 8, Number 3, September, 2006, Pages 263-269.60. H. Chang, S. M. Iqbal., E. A. Stach, A. H. King, N. J. Zaluzec, R. Bashir, "Fabrication and Characterization of Solid State Nanopores using Field Emission Scanning Electron Beam", Applied Physics Letters, 88, 103109, 2006. Also published online in Virtual Journal of Nanoscale Science & Technology, March 20, 2006.
55. S. Iqbal, G. Balasubramaium, S. Ghosh, D. Bergstrom, R. Bashir, "Electrical Characterization of DNA Molecules in Nano-scale Gap Junctions", Applied Physics Letters, 86, 11th April, 2005. Also selected for the April 15, 2005 issue of Virtual Journal of Biological Physics Research.
50.
H. Chang, F. Kosari, G. Andreakakis, M. A. Alam, G. Vasmatzis, R. Bashir, "DNA Mediated Fluctuations in Ionic Current through Silicon Oxide Nano-Channels", Nano Letters vol. 4, No. 8, 1551-1556, 2004.36.
H. Chang, A. Ikram, T. Geng, F. Kosari, G. Vasmatzis, A. Bhunia, and R. Bashir, "Electrical characterization of microorganisms using microfabricated devices", J. Vac. Sci. Technol. B 20, 2058 (2002).